EMBL (European Molecular Biology Laboratory) and EBI (European Bioinformatics Institute) are basically the equivalent of NCBI here in the US. They hold the same data but store the data in a different format. Your task is to parse out an EMBL record (see file attached) just like we did for GenBank records in the discussions.
EMBL’s records are actually easier to parse out! Just parse out the sequence ID (line starts with ID), description (DE) and sequence (SQ). Use at least one function.
ID M91373; SV 1; linear; mRNA; STD; PLN; 1131 BP.
XX
AC M91373;
XX
DT 24-APR-1992 (Rel. 31, Created)
DT 17-APR-2015 (Rel. 83, Last updated, Version 4)
XX
DE Cucumis sativus peroxidase mRNA, complete cds.
XX
KW peroxidase.
XX
OS Cucumis sativus (cucumber)
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC fabids; Cucurbitales; Cucurbitaceae; Cucumis.
XX
RN [1]
RP 1-1131
RA Rasmussen J.B., Smith J.A., Williams S., Burkhart W., Ward E.R.,
RA Somerville S.C., Ryals J., Hammerschmidt R.;
RT “Cloning and systemic expression of an acidic peroxidase associated with
RT systemic acquired resistance to disease in cucumber”;
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1..1131
FT /organism=”Cucumis sativus”
FT /mol_type=”mRNA”
FT /db_xref=”taxon:3659″
FT sig_peptide 32..97
FT /gene=”peroxidase”
FT /note=”putative”
FT CDS 32..1021
FT /codon_start=1
FT /gene=”pre-peroxidase”
FT /product=”peroxidase”
FT /note=”putative”
FT /db_xref=”GOA:Q39652″
FT /db_xref=”HSSP:1PA2″
FT /db_xref=”InterPro:IPR000823″
FT /db_xref=”InterPro:IPR002016″
FT /db_xref=”InterPro:IPR010255″
FT /db_xref=”InterPro:IPR019793″
FT /db_xref=”InterPro:IPR019794″
FT /db_xref=”UniProtKB/TrEMBL:Q39652″
FT /protein_id=”AAA33127.1″
FT /translation=”MGLPKMAAIVVVVALMLSPSQAQLSPFFYATTCPQLPFVVLNVVA
FT QALQTDDRAAAKLIRLHFHDCFVNGCDGSILLVDVPGVIDSELNGPPNGGIQGMDIVDN
FT IKAAVESACPGVVSCADILAISSQISVFLSGGPIWVVPMGRKDSRIANRTGTSNLPGPS
FT ETLVGLKGKFKDQGLDSTDLVALSGAHTFGKSRCMFFSDRLINFNGTGRPDTTLDPIYR
FT EQLRRLCTTQQTRVNFDPVTPTRFDKTYYNNLISLRGLLQSDQELFSTPRADTTAIVKT
FT FAANERAFFKQFVKSMIKMGNLKPPPGIASEVRLDCKRVNPVRAYDVM”
FT mat_peptide 98..1018
FT /gene=”peroxidase”
FT /product=”peroxidase”
FT /note=”putative”
XX
SQ Sequence 1131 BP; 314 A; 276 C; 229 G; 312 T; 0 other;
accagagaag accccatttg cagtatcaaa aatgggttta cctaaaatgg cagccattgt 60
tgtggtggtg gctttgatgc tatcaccctc tcaagcccag ctttctcctt tcttctacgc 120
caccacatgc cctcagctgc ctttcgttgt tctcaacgtg gttgcccaag ccctacagac 180
tgatgaccga gctgctgcta agctcattcg cctccatttt catgattgct ttgtcaatgg 240
gtgtgatgga tcgattctat tggtagacgt accgggcgtt atcgatagtg aacttaatgg 300
acctccaaat ggtggaatcc aaggaatgga cattgtggac aacatcaaag cagcagttga 360
gagtgcttgt ccaggagttg tttcttgcgc tgat
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